PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn117711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 855aa    MW: 95832 Da    PI: 10.0908
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn117711genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-074581240
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     +rW++eE   +++a +++G + W+++a  +   R+ +++
       Achn117711 45 LRWSEEELGCFYEAYRKYGQD-WEKVATLVR-DRSVEMV 81
                     69*****************99.********9.9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00694391IPR001005SANT/Myb domain
PfamPF002491.9E-64681IPR001005SANT/Myb domain
CDDcd001676.00E-54681No hitNo description
SuperFamilySSF466898.22E-94692IPR009057Homeodomain-like
PfamPF065843.0E-32560660IPR033471DIRP domain
SMARTSM011353.8E-56560661IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MAPTRKSRTV NKRFSYVNEV SSSKDGENAK KSLQRKRKLS DMLGLRWSEE ELGCFYEAYR  60
KYGQDWEKVA TLVRDRSVEM VEALYVMNKA YLSLPEGTAS VVGLIAMMTD HYCNLGGSDS  120
EQDSNDRTEA SRKSQKCGRG TFRPNTSVGS DGHFLLHSQP VASSYGFLSL PKKRRSLDKA  180
FFFSSFVRIK VMRLNYGKVG LHFATGSRPR VVGKRTPRFP VSYSYEKVNG EKFFSPTRQS  240
LKLKPDANDD EVAHEVALAL AEASQKGGSP QVSQTPNRRT RNIMSSPNRN VERMRAELEL  300
TNPNLGNEMD ENGFKGSMGS MEADNGDFAD DRNYLIETKV VGPSELRKQR RLHDKKLEID  360
DSGYGHLDDI REACSGTEGG QNLGAFSEKL DFEVANRKLA RSSSQVSRKK SKKALFGKDE  420
GSPFDALQTL ADLSLMMPTT IIEDESSVQV KEEEDDLVHM YGSLETLPAS HQRNRLKSSG  480
VKAKGNQLRF GTSSIKTSKL RKSLIINVSA IPEEKEEPQQ STAILPGMKQ KMLTSKVRKD  540
KLSNSLSNNH LRRWCAFEWF YSAIDYPWFA KREFVEYLNH VGMGHVPRLT RVEWGVIKSS  600
LGKPRRFSKQ FLKEEKEKLN HYRDSVRTHY TELRAGTREG LPTDLAKPLS VGQRVMAIHP  660
RTKQIHDGNV LTVDHSRCRV QFDRTELGVE FVQGATTDPN SQAKIGTKET ATNQQAPNFQ  720
PYILAQIQGK QADVQALAEL TRALDKKAVD FRFRAVALVF LLSPLSLSIL VSHLSVDIPS  780
LCSLFLYHFR KASIIPTAIT MPITVGTVAS KDITRIAHPM SCHSSPIATI QRSPVTTQIS  840
KRSHIDCTTI IIAP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419627.10.0hypothetical protein CICLE_v10004186mg
RefseqXP_007227363.10.0hypothetical protein PRUPE_ppa000476mg
SwissprotQ6A3321e-105ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLB9RT240.0B9RT24_RICCO; Always early, putative
STRINGSolyc01g067560.2.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.25e-92DNA binding